PCAGenomicSignatures-class

PCA-based GenomicSignatures-class.

Arguments

x

A GenomicSignatures-class object

value

See details.

Details

PCAGenomicSignatures

Slots

trainingData

A DataFrame class object for metadata associated with training data

Examples

data(miniRAVmodel)
miniRAVmodel
#> class: PCAGenomicSignatures 
#> dim: 13934 20 
#> metadata(8): cluster size ... version geneSets
#> assays(1): RAVindex
#> rownames(13934): CASKIN1 DDX3Y ... CTC-457E21.9 AC007966.1
#> rowData names(0):
#> colnames(20): RAV1076 RAV338 ... RAV312 RAV468
#> colData names(4): RAV studies silhouetteWidth gsea
#> trainingData(2): PCAsummary MeSH
#> trainingData names(536): DRP000987 SRP059172 ... SRP164913 SRP188526