Extract information on a specific RAV

getRAVInfo(RAVmodel, ind)

Arguments

RAVmodel: A PCAGenomicSignatures object
ind: An index of RAV

Value

A list with four elements: clusterSize, silhouetteWidth, enrichedPathways (the number of enriched pathways), and members. The 'members' is the summary table of PCs in RAV, containing three columns: studyName, PC, and Variance explained (

Examples

data(miniRAVmodel)
getRAVInfo(miniRAVmodel, ind = 438)
#> $clusterSize
#> [1] 6
#> 
#> $silhouetteWidth
#> [1] 0.04
#> 
#> $enrichedPathways
#> [1] 43
#> 
#> $members
#>   studyName PC Variance explained (%)
#> 1 ERP023550  5                   3.68
#> 2 SRP074349  7                   2.24
#> 3 SRP107025  9                   2.23
#> 4 SRP113470  3                   4.34
#> 5 SRP155976  5                   2.48
#> 6 SRP172499  6                   2.45
#>