List the available RAVmodels

Source: R/availableRAVmodel.R

List the available RAVmodels

availableRAVmodel(simplify = TRUE)

Arguments

simplify

Default is TRUE. If it is set to FALSE, the additional metadata of different versions of RAVmodel

Value

Under the default, this function will return a data frame with four columns - prior, version, update, pkg_version.

  • prior : Different gene sets used for RAVmodel annotation. Currently, two are available - C2 for MSigDB C2 (curated gene sets), and PLIERpriors for bloodCellMarkersIRISDMAP, svmMarkers, and canonicalPathways

  • version : RAVmodel's version, which can be an input for version argument of getModel function

  • update : Date the RAVmodel is updated

  • pkg_version : Compatible version of GenomicSuperSignature

Examples

availableRAVmodel()
#>         prior version   update pkg_version
#> 1          C2    beta 20201101       1.1.0
#> 3          C2  latest 20220115       1.3.0
#> 4 PLIERpriors    beta 20201101       1.1.0
#> 6 PLIERpriors  latest 20220115       1.3.0