Oh Lab | Bioinformatics & Public Health Data Science

Research Highlights

Interpreting new transcriptomic datasets through instant comparison to public databases using GenomicSuperSignature.

FAIR principles

Systematically harmonizing metadata across major public biomedical data repositories to enhance the FAIRness of public omics data.

Histopathology image

Creating standardized workflows for histopathology image analysis integrated with multi-modal omics data from TCGA.

Microbiome antibiotics

Building curated databases of antibiotic-exposed microbiome data to understand personalized effects and antibiotic resistance.

Featured Publications

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Manghi P, Antonello G, Schiffer L, …, Oh S, …, Segata N, Waldron L

Nature Communications, 2025

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Oh S, Geistlinger L, Ramos M, Blankenberg D, van den Beek M, Taroni JN, et al.

Nature Communications, 2022

Lefser: Implementation of metagenomic biomarker discovery tool, LEfSe, in R

Khleborodova A, Gamboa-Tuz SD, Ramos M, Segata N, Waldron L, Oh S

Bioinformatics, 2024

Join the Lab

We are always looking for motivated students, postdocs, and developers to join our team.

Student fieldwork, internships, and part-time positions are often available. Contact us with your CV and a statement of interest.